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Systems Biology in Ecology & Agriculture

Freilich Lab

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NetMet is a tool for predicting the metabolic performances of microorganisms and their corresponding combinations in user-defined environments.

NetCom is a tool for predicting metabolic activities in microbial communities based on network-based interpretation of assembled and annotated metagenomics data.

NetCom2 is a pipeline for generating predictions for the selective targeting of microbial groups based on one the processing of assembled and annotated metagenomics.

NetCmpt tool is designed to calculate the metabolic competitive potential between pairs of bacterial species. Original tool is described in Kerimer et al. A python implantation was developed by Gon Carmi

BEvis is a pipe line for generating Networks of exchange interactions between bacterial metabolic models in a consortium.

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